Reconstructing unseen transmission events to infer dengue dynamics from viral sequences

Author(s): Salje H, Wesolowski A, Brown TS, Kiang MV, Berry IM, Lefrancq N, Fernandez S, Jarman RG, Ruchusatsawat K, Iamsirithaworn S, Vandepitte WP, Suntarattiwong P, Read JM, Klungthong C, Thaisomboonsuk B, Engø-Monsen K, Buckee C, Cauchemez S, Cummings DATJournal: Nat CommunPMID: 33753725 March 2021
For most pathogens, transmission is driven by interactions between the behaviours of infectious individuals, the behaviours of the wider population,…

Enhancing disease surveillance with novel data streams: challenges and opportunities.

Author(s): Althouse BM, Scarpino SV, Meyers LA, Ayers JW, Bargsten M, Baumbach J, Brownstein JS, Castro L, Clapham H, Cummings DA, Del Valle S, Eubank S, Fairchild G, Finelli L, Generous N, George D, Harper DR, Hébert-Dufresne L, Johansson MA, Konty K, Lipsitch M, Milinovich G, Miller JD, Nsoesie EO, Olson DR, Paul M, Polgreen PM, Priedhorsky R, Read JM, Rodríguez-Barraquer I, Smith DJ, Stefansen C, Swerdlow DL, Thompson D, Vespignani A, Wesolowski AJournal: EPJ Data SciPMID: 27990325 January 2015
Novel data streams (NDS), such as web search data or social media updates, hold promise for enhancing the capabilities of…