Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: a malaria case study.

Author(s): LaVerriere E, Schwabl P, Carrasquilla M, Taylor AR, Johnson ZM, Shieh M, Panchal R, Straub TJ, Kuzma R, Watson S, Buckee CO, Andrade CM, Portugal S, Crompton PD, Traore B, Rayner JC, Corredor V, James K, Cox H, Early AM, MacInnis BL, Neafsey DEJournal: Mol Ecol ResourPMID: 35437908 April 2022
Multiplexed PCR amplicon sequencing (AmpSeq) is an increasingly popular application for cost-effective monitoring of threatened species and managed wildlife populations,…

Low parasite connectivity among three malaria hotspots in Thailand.

Author(s): Chang HH, Chang MC, Kiang M, Mahmud AS, Ekapirat N, Engø-Monsen K, Sudathip P, Buckee CO, Maude RJJournal: Sci RepPMID: 34857842 December 2021
Identifying sources and sinks of malaria transmission is critical for designing effective intervention strategies particularly as countries approach elimination. The…

Genomics, social media and mobile phone data enable mapping of SARS-CoV-2 lineages to inform health policy in Bangladesh.

Author(s): Cowley LA, Afrad MH, Rahman SIA, Mamun MMA, Chin T, Mahmud A, Rahman MZ, Billah MM, Khan MH, Sultana S, Khondaker T, Baker S, Banik N, Alam AN, Mannoor K, Banu S, Chowdhury A, Flora MS, Thomson NR, Buckee CO, Qadri F, Shirin TJournal: Nat MicrobiolPMID: 34497354 September 2021
Genomics, combined with population mobility data, used to map importation and spatial spread of SARS-CoV-2 in high-income countries has enabled…