Publications

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Sequence Characteristics of Coronavirus Disease 2019 (COVID-19) Persistence and Reinfection.

Author(s): Choudhary MC, Crain CR, Qiu X, Hanage W, Li JZ|Journal: Clin Infect Dis|PMID: 33906227| January 2022

Both severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) reinfection and persistent infection have been reported, but sequence characteristics in these…

Characterizing features of outbreak duration for novel SARS-CoV-2 variants of concern

Author(s): Washburne AD, Hupert N, Kogan N, Hanage W, Santillana M|Journal: medRxiv| January 2022

Characterizing the dynamics of epidemic trajectories is critical to understanding the potential impacts of emerging outbreaks and to designing appropriate…

Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Sequence Characteristics of Coronavirus Disease 2019 (COVID-19) Persistence and Reinfection

Author(s): Choudhary MC, Crain CR, Qiu X, Hanage W, Li JZ|Journal: Clin Infect Dis| June 2021

Both severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) reinfection and persistent infection have been reported, but sequence characteristics in these…

Host population structure and treatment frequency maintain balancing selection on drug resistance.

Author(s): Cobey S, Baskerville EB, Colijn C, Hanage W, Fraser C, Lipsitch M|Journal: J R Soc Interface|PMID: 28835542| August 2017

It is a truism that antimicrobial drugs select for resistance, but explaining pathogen- and population-specific variation in patterns of resistance…

What is the mechanism for persistent coexistence of drug-susceptible and drug-resistant strains of Streptococcus pneumoniae?

Author(s): Colijn C, Cohen T, Fraser C, Hanage W, Goldstein E, Givon-Lavi N, Dagan R, Lipsitch M|Journal: J R Soc Interface|PMID: 19940002| June 2010

The rise of antimicrobial resistance in many pathogens presents a major challenge to the treatment and control of infectious diseases.…