Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques. Author(s): Baaijens JA, Zulli A, Ott IM, Nika I, van der Lugt MJ, Petrone ME, Alpert T, Fauver JR, Kalinich CC, Vogels CBF, Breban MI, Duvallet C, McElroy KA, Ghaeli N, Imakaev M, Mckenzie-Bennett MF, Robison K, Plocik A, Schilling R, Pierson M, Littlefield R, Spencer ML, Simen BB, Yale SARS-CoV-2 Genomic Surveillance Initiative., Hanage WP, Grubaugh ND, Peccia J, Baym M|Journal: Genome Biol|PMID: 36348471| November 2022 Effectively monitoring the spread of SARS-CoV-2 mutants is essential to efforts to counter the ongoing pandemic. Predicting lineage abundance from…
Determinants of Staphylococcus aureus carriage in the developing infant nasal microbiome. Author(s): Accorsi EK, Franzosa EA, Hsu T, Joice Cordy R, Maayan-Metzger A, Jaber H, Reiss-Mandel A, Kline M, DuLong C, Lipsitch M, Regev-Yochay G, Huttenhower C|Journal: Genome Biol|PMID: 33308267| December 2020 Staphylococcus aureus is a leading cause of healthcare- and community-associated infections and can be difficult to treat due to antimicrobial…
Epidemiologic data and pathogen genome sequences: a powerful synergy for public health. Author(s): Grad YH, Lipsitch M|Journal: Genome Biol|PMID: 25418119| November 2014 Epidemiologists aim to inform the design of public health interventions with evidence on the evolution, emergence and spread of infectious…
Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus. Author(s): Castillo-RamÃrez S, Corander J, Marttinen P, Aldeljawi M, Hanage WP, Westh H, Boye K, Gulay Z, Bentley SD, Parkhill J, Holden MT, Feil EJ|Journal: Genome Biol|PMID: 23270620| December 2012 Next-generation sequencing (NGS) is a powerful tool for understanding both patterns of descent over time and space (phylogeography) and the…
