Publications

Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine.

Author(s): Cai FY, Fussell T, Cobey S, Lipsitch MJournal: PLoS Comput BiolPMID: 30273332 October 2018

For encapsulated bacteria such as Streptococcus pneumoniae, asymptomatic carriage is more common and longer in duration than disease, and hence…

Speciation trajectories in recombining bacterial species.

Author(s): Marttinen P, Hanage WPJournal: PLoS Comput BiolPMID: 28671999 July 2017

It is generally agreed that bacterial diversity can be classified into genetically and ecologically cohesive units, but what produces such…

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites.

Author(s): Chang HH, Worby CJ, Yeka A, Nankabirwa J, Kamya MR, Staedke SG, Dorsey G, Murphy M, Neafsey DE, Jeffreys AE, Hubbart C, Rockett KA, Amato R, Kwiatkowski DP, Buckee CO, Greenhouse BJournal: PLoS Comput BiolPMID: 28125584 January 2017

As many malaria-endemic countries move towards elimination of Plasmodium falciparum, the most virulent human malaria parasite, effective tools for monitoring…

Use of an individual-based model of pneumococcal carriage for planning a randomized trial of a whole-cell vaccine.

Speciation trajectories in recombining bacterial species.

THE REAL McCOIL: A method for the concurrent estimation of the complexity of infection and SNP allele frequency for malaria parasites.

Evaluating Spatial Interaction Models for Regional Mobility in Sub-Saharan Africa.

Within-host bacterial diversity hinders accurate reconstruction of transmission networks from genomic distance data.

A network approach to analyzing highly recombinant malaria parasite genes.

Evolution of the multi-domain structures of virulence genes in the human malaria parasite, Plasmodium falciparum.